PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892084
Common NameARALYDRAFT_892084
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 335aa    MW: 38152.3 Da    PI: 7.0299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892084genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017170189120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++C+ C k+F+r  n++ H+
   892084 170 FSCHLCLKTFNRYNNMQMHM 189
              89*****************9 PP

2zf-C2H213.10.00029254276123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C  Cgk F  k + ++H +++
   892084 254 FACRRCGKAFAVKGDWRTHEKNC 276
              78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-4170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.577170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-6236274No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5240274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSNPACSNLF NNGCDHNNFN YSTSLSYIYN SHESFYYPNY INHTPTTFTS PNSPPLREAL  60
PLLSLSPIRH QEQQDQHYFM DTDQISSSNF LDDPHVTVDL HLGQPNYGVG ENIRSYIAPD  120
TTTDDQDHDR GVEVTVESYL HDDDDHGDLH RAHHYWIPTP SQILIGPTQF SCHLCLKTFN  180
RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCFCCA PGCKNNIDHP RAKPLKDFRT  240
LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA  300
FGSGHVPCGI DSFGGDHEDY YEAASDIEQT MSVS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894301.10.0zinc finger protein
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLD7KHP20.0D7KHP2_ARALL; Zinc finger protein
STRINGscaffold_104878.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5